Similarity Matrix

Similarity Matrixes show the similarity between variables. There is a line that goes across the greatest length of the graph that shows 100% similarity. This line seems inevitable no matter what you are graphing. Squares are used to create, generally a cube, as to what will be representing the data, The squares size, color, shading, or/and pattern could vary to show the similarity or difference between the variables.

The graph shown is a Similarity Matrix of “Correlation matrices for two polymers showing similarity relationships among pairs of conformations.”

http://www.renci.org/~sthakur/